STRINGSTRING
Bra000871.1-P protein (Brassica rapa) - STRING interaction network
"Bra000871.1-P" - AT4G02620 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000871.1-PAT4G02620 (E=6e-066) | vacuolar ATPase subunit F family protein (128 aa)    
Predicted Functional Partners:
Bra007415
AT3G58730 (E=7e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
   
  0.990
Bra003352
AT3G58730 (E=9e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
   
  0.990
Bra014555
AT3G58730 (E=3e-050) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (202 aa)
   
  0.988
Bra039048
AT3G28710 (E=7e-207) | H+-transporting two-sector ATPase, putative (351 aa)
   
  0.988
Bra033054
AT3G28715 (E=8e-206) | H+-transporting two-sector ATPase, putative (351 aa)
   
  0.988
Bra025348
AT3G28710 (E=5e-206) | H+-transporting two-sector ATPase, putative (351 aa)
   
  0.988
Bra035074
AT1G78900 (E=0.0) VHA-A | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism (623 aa)
   
  0.988
Bra003633
AT1G78900 (E=0.0) VHA-A | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism (623 aa)
   
  0.988
Bra000737
AT4G11150 (E=2e-113) TUF, emb2448, TUFF, VHA-E1 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (431 aa)
   
  0.987
Bra035248
AT1G64200 (E=3e-082) VHA-E3 | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3); proton-transporting ATPase, rotational mechanism (217 aa)
   
  0.987
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (34%) [HD]