STRINGSTRING
Bra000872 protein (Brassica rapa) - STRING interaction network
"Bra000872" - AT4G02590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000872AT4G02590 (E=2e-123) UNE12 | UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (309 aa)    
Predicted Functional Partners:
Bra033368
AT1G03040 (E=5e-107) | basic helix-loop-helix (bHLH) family protein (311 aa)
     
 
0.908
Bra033010
AT3G27420 (E=2e-035) | unknown protein (492 aa)
       
 
  0.723
Bra023354
AT5G11980 (E=9e-296) | conserved oligomeric Golgi complex component-related / COG complex component-related (569 aa)
       
 
  0.671
Bra019205
AT4G24840 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein transport, Golgi organization; LOCATED IN- vacuole; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- COG complex component, COG2 (InterPro-IPR009316); Has 214 Blast hits to 204 proteins in 99 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). (852 aa)
       
 
  0.509
Bra023158
AT1G61660 (E=1e-023) | basic helix-loop-helix (bHLH) family protein (142 aa)
       
      0.489
Bra019509
AT3G47640 (E=3e-090) | basic helix-loop-helix (bHLH) family protein (234 aa)
       
      0.489
Bra009544
AT5G03500 (E=2e-072) | transcription coactivator (168 aa)
       
      0.489
Bra026843
AT5G03495 (E=4e-028) | nucleotide binding (291 aa)
           
  0.482
Bra009214
AT5G03480 (E=1e-033) | nucleic acid binding / nucleotide binding (332 aa)
           
  0.482
Bra009213
AT5G03480 (E=9e-027) | nucleic acid binding / nucleotide binding (440 aa)
           
  0.482
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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