STRINGSTRING
Bra000874 protein (Brassica rapa) - STRING interaction network
"Bra000874" - AT4G02570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000874AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (738 aa)    
Predicted Functional Partners:
Bra008231
AT1G75950 (E=2e-076) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
     
  0.981
Bra003735
AT1G75950 (E=9e-077) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
     
  0.981
Bra039504
AT1G10230 (E=1e-046) ASK18 | ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase (169 aa)
     
  0.975
Bra025795
AT1G20140 (E=7e-072) ASK4 | ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase (161 aa)
     
  0.975
Bra020111
AT5G20570 (E=1e-061) ROC1, RBX1, HRT1, ATRBX1 | RBX1 (RING-BOX 1); protein binding (119 aa)
       
  0.975
Bra006565
AT5G20570 (E=6e-060) ROC1, RBX1, HRT1, ATRBX1 | RBX1 (RING-BOX 1); protein binding (118 aa)
       
  0.975
Bra002312
AT5G20570 (E=2e-058) ROC1, RBX1, HRT1, ATRBX1 | RBX1 (RING-BOX 1); protein binding (118 aa)
       
  0.975
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
     
  0.974
Bra028289
AT4G25440 (E=8e-211) ZFWD1 | ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding (540 aa)
     
  0.973
Bra025586
AT5G40880 (E=1e-185) | WD-40 repeat family protein / zfwd3 protein (ZFWD3) (429 aa)
     
  0.973
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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