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Bra000877 protein (Brassica rapa) - STRING interaction network
"Bra000877" - AT4G02500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000877AT4G02500 (E=2e-252) ATXT2, XXT2, XT2 | XT2 (UDP-XYLOSYLTRANSFERASE 2); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (463 aa)    
Predicted Functional Partners:
Bra036680
AT2G20370 (E=2e-285) KAM1, MUR3 | MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups (599 aa)
       
 
  0.827
Bra024785
AT2G03220 (E=6e-275) FT1, ATFUT1, ATFT1, MUR2 | FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups (564 aa)
       
 
  0.814
Bra015915
AT1G74380 (E=6e-247) XXT5 | XXT5 (XYLOGLUCAN XYLOSYLTRANSFERASE 5); transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (456 aa)
     
 
0.628
Bra007696
AT3G62720 (E=2e-256) ATXT1, XT1, XXT1 | XT1 (XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (456 aa)
       
 
0.616
Bra039086
AT3G27280 (E=9e-132) ATPHB4 | ATPHB4 (PROHIBITIN 4) (278 aa)
       
      0.612
Bra032539
AT1G03860 (E=6e-152) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
       
      0.612
Bra030546
AT1G03860 (E=2e-152) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
       
      0.612
Bra028475
AT5G40770 (E=2e-136) ATPHB3 | ATPHB3 (PROHIBITIN 3) (277 aa)
       
      0.612
Bra025548
AT5G40770 (E=6e-138) ATPHB3 | ATPHB3 (PROHIBITIN 3) (277 aa)
       
      0.612
Bra025263
AT3G27280 (E=3e-131) ATPHB4 | ATPHB4 (PROHIBITIN 4) (278 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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