STRINGSTRING
Bra000883 protein (Brassica rapa) - STRING interaction network
"Bra000883" - AT4G02390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000883AT4G02390 (E=5e-298) APP, PARP1, ATPARP1 | APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE); NAD+ ADP-ribosyltransferase/ nucleic acid binding (633 aa)    
Predicted Functional Partners:
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
     
 
  0.952
Bra018259
AT2G31320 (E=0.0) PARP2, ATPARP2 | PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding (993 aa)
       
0.950
Bra032088
AT2G24490 (E=2e-122) RPA2, ATRPA2, ROR1 | RPA2 (REPLICON PROTEIN A2); protein binding (273 aa)
       
  0.947
Bra021384
AT3G02920 (E=6e-131) | replication protein-related (277 aa)
       
  0.947
Bra002414
AT5G22470 (E=0.0) | NAD+ ADP-ribosyltransferase (809 aa)
         
0.908
Bra021756
AT2G31870 (E=3e-241) TEJ | TEJ (Sanskrit for ’bright’); poly(ADP-ribose) glycohydrolase (553 aa)
       
  0.881
Bra021755
AT2G31865 (E=3e-179) | poly (ADP-ribose) glycohydrolase (PARG) family protein (510 aa)
       
  0.871
Bra021718
AT2G31865 (E=8e-178) | poly (ADP-ribose) glycohydrolase (PARG) family protein (513 aa)
       
  0.871
Bra005637
AT2G31865 (E=4e-118) | poly (ADP-ribose) glycohydrolase (PARG) family protein (569 aa)
       
  0.871
Bra040938
AT4G32700 (E=0.0) | DNA-directed DNA polymerase family protein (2127 aa)
     
 
  0.867
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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