STRINGSTRING
Bra000887 protein (Brassica rapa) - STRING interaction network
"Bra000887" - AT1G02780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000887AT1G02780 (E=1e-073) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (189 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra018233.1-P
AT3G53870 (E=3e-049) | 40S ribosomal protein S3 (RPS3B) (123 aa)
 
  0.999
Bra021724
AT3G53870 (E=6e-129) | 40S ribosomal protein S3 (RPS3B) (249 aa)
 
  0.999
Bra022851
AT3G53870 (E=1e-116) | 40S ribosomal protein S3 (RPS3B) (249 aa)
 
  0.999
Bra022859
AT3G53870 (E=1e-117) | 40S ribosomal protein S3 (RPS3B) (249 aa)
 
  0.999
Bra021722
AT3G53870 (E=1e-128) | 40S ribosomal protein S3 (RPS3B) (249 aa)
 
  0.999
Bra018226
AT3G53870 (E=1e-118) | 40S ribosomal protein S3 (RPS3B) (249 aa)
 
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.999
Bra037493
AT5G39740 (E=2e-131) OLI7, RPL5B | 60S ribosomal protein L5 (RPL5B) (313 aa)
   
  0.999
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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