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Bra000892 protein (Brassica rapa) - STRING interaction network
"Bra000892" - AT4G19750 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000892AT4G19750 (E=9e-133) | glycosyl hydrolase family 18 protein (362 aa)    
Predicted Functional Partners:
Bra014765
AT3G55260 (E=8e-291) HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (550 aa)
   
   
  0.814
Bra004121
AT1G65590 (E=6e-265) HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase (534 aa)
   
   
  0.814
Bra032460
AT1G05590 (E=3e-287) HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (582 aa)
   
   
  0.810
Bra026469
AT5G24090 (E=2e-151) | acidic endochitinase (CHIB1) (301 aa)
         
  0.747
Bra009731
AT5G24090 (E=1e-134) | acidic endochitinase (CHIB1) (301 aa)
         
  0.747
Bra033318
AT1G02360 (E=2e-105) | chitinase, putative (195 aa)
 
   
  0.570
Bra036316
AT4G01700 (E=3e-135) | chitinase, putative (279 aa)
 
   
  0.565
Bra038727
AT3G12500 (E=9e-071) ATHCHIB, PR3, PR-3, CHI-B, B-CHI | ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase (202 aa)
 
   
  0.563
Bra015457
AT1G05850 (E=4e-171) POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL1 | POM1 (POM-POM1); chitinase (321 aa)
 
   
  0.563
Bra030628
AT1G05850 (E=6e-173) POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL1 | POM1 (POM-POM1); chitinase (321 aa)
 
   
  0.562
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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