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Bra000893 protein (Brassica rapa) - STRING interaction network
"Bra000893" - AT4G02100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000893AT4G02100 (E=7e-229) | DNAJ heat shock N-terminal domain-containing protein (539 aa)    
Predicted Functional Partners:
Bra033239
AT1G01720 (E=1e-148) ATAF1, ANAC002 | ATAF1; transcription activator/ transcription factor (285 aa)
           
  0.424
Bra030919
AT3G14230 (E=3e-061) RAP2.2 | RAP2.2; DNA binding / transcription factor (306 aa)
           
  0.424
Bra027355
AT3G14230 (E=7e-134) RAP2.2 | RAP2.2; DNA binding / transcription factor (379 aa)
           
  0.424
Bra021543
AT3G14230 (E=4e-126) RAP2.2 | RAP2.2; DNA binding / transcription factor (365 aa)
           
  0.424
Bra003675
AT1G77670 (E=2e-200) | aminotransferase class I and II family protein (403 aa)
           
  0.424
Bra003625
AT1G16680 (E=5e-152) | DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (554 aa)
           
  0.424
Bra034120
AT3G10500 (E=1e-211) anac053 | anac053 (Arabidopsis NAC domain containing protein 53); transcription factor (537 aa)
           
  0.418
Bra009456
AT5G04410 (E=3e-243) NAC2, anac078 | NAC2; transcription factor (554 aa)
           
  0.418
Bra005804
AT5G04410 (E=5e-243) NAC2, anac078 | NAC2; transcription factor (567 aa)
           
  0.418
Bra019343
AT4G22950 (E=2e-077) AGL19, GL19 | AGL19 (AGAMOUS-LIKE 19); transcription factor (219 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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