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Bra000894 protein (Brassica rapa) - STRING interaction network
"Bra000894" - AT1G61580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000894AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
   
  0.999
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra020542
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (945 aa)
   
  0.999
Bra017279
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (878 aa)
   
  0.999
Bra010782
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (843 aa)
   
  0.999
Bra010781
AT1G56070 (E=2e-298) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (552 aa)
   
  0.999
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Bra007151
AT3G55290 (E=2e-127) | short-chain dehydrogenase/reductase (SDR) family protein (448 aa)
   
  0.999
Bra037493
AT5G39740 (E=2e-131) OLI7, RPL5B | 60S ribosomal protein L5 (RPL5B) (313 aa)
   
  0.999
Bra013215
AT3G25520 (E=1e-134) ATL5, PGY3, OLI5, RPL5A | ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome (332 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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