STRINGSTRING
Bra000895 protein (Brassica rapa) - STRING interaction network
"Bra000895" - AT4G02080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000895AT4G02080 (E=1e-094) ASAR1, ATSARA1C, ATSAR2 | ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (193 aa)    
Predicted Functional Partners:
Bra016539
AT1G18830 (E=1e-307) | transducin family protein / WD-40 repeat family protein (912 aa)
     
  0.993
Bra007747
AT3G63460 (E=0.0) | WD-40 repeat family protein (1099 aa)
     
  0.993
Bra007745
AT3G63460 (E=0.0) | WD-40 repeat family protein (1099 aa)
     
  0.993
Bra003525
AT3G63460 (E=0.0) | WD-40 repeat family protein (1106 aa)
     
  0.993
Bra026663
AT2G01470 (E=6e-151) STL2P, ATSEC12 | STL2P (SEC12P-LIKE 2 PROTEIN); nucleotide binding (398 aa)
       
  0.952
Bra024885
AT5G50550 (E=4e-137) | WD-40 repeat family protein / St12p protein, putative (373 aa)
       
  0.952
Bra039126
AT3G01340 (E=4e-173) | protein transport protein SEC13 family protein / WD-40 repeat family protein (302 aa)
     
 
  0.949
Bra022774
AT2G30050 (E=2e-176) | transducin family protein / WD-40 repeat family protein (301 aa)
     
 
  0.949
Bra021603
AT2G30050 (E=7e-170) | transducin family protein / WD-40 repeat family protein (692 aa)
     
 
  0.949
Bra018343
AT2G30050 (E=1e-167) | transducin family protein / WD-40 repeat family protein (365 aa)
     
 
  0.949
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]