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Bra000896 protein (Brassica rapa) - STRING interaction network
"Bra000896" - AT4G02070 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000896AT4G02070 (E=0.0) MSH6, MSH6-1, ATMSH6 | MSH6 (MUTS HOMOLOG 6); damaged DNA binding ; Component of the post-replicative DNA mismatch repair system (MMR) (1337 aa)    
Predicted Functional Partners:
Bra000674
AT4G09140 (E=0.0) ATMLH1, MLH1 | MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging (749 aa)
 
  0.992
Bra001709
AT3G18524 (E=0.0) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding ; Component of the post-replicative DNA mismatch repair system (MMR) (937 aa)
   
0.992
Bra028327
AT3G18524 (E=1e-049) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding (165 aa)
   
0.990
Bra018549
AT4G02460 (E=0.0) PMS1 | PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (1123 aa)
   
  0.987
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.980
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.980
Bra017718
AT4G35520 (E=0.0) MLH3, ATMLH3 | MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding / mismatched DNA binding (1211 aa)
   
  0.979
Bra009908
AT5G26680 (E=9e-202) | endonuclease, putative ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- [...] (363 aa)
   
  0.962
Bra032653
AT1G01880 (E=2e-205) | DNA repair protein, putative (603 aa)
   
  0.962
Bra029924
AT3G48900 (E=4e-251) | DNA binding / catalytic/ chromatin binding / nuclease (622 aa)
   
  0.962
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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