STRINGSTRING
Bra000909 protein (Brassica rapa) - STRING interaction network
"Bra000909" - AT4G01897 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000909AT4G01897 (E=1e-048) | unknown protein (114 aa)    
Predicted Functional Partners:
Bra026504
AT5G23300 (E=1e-229) PYRD | PYRD (pyrimidine d); dihydroorotate dehydrogenase (458 aa)
              0.437
Bra022246
AT3G17810 (E=4e-225) | dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein (432 aa)
              0.437
Bra021275
AT3G17810 (E=1e-226) | dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein (424 aa)
              0.437
Bra009669
AT5G23300 (E=7e-226) PYRD | PYRD (pyrimidine d); dihydroorotate dehydrogenase (459 aa)
              0.437
Bra001684
AT3G17810 (E=1e-041) | dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein (83 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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