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Bra000912 protein (Brassica rapa) - STRING interaction network
"Bra000912" - AT4G01880 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra000912AT4G01880 (E=6e-222) | methyltransferase (449 aa)    
Predicted Functional Partners:
Bra023203
AT1G31780 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Conserved oligomeric complex COG6 (InterPro-IPR010490); Has 281 Blast hits to 279 proteins in 131 species- Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 106; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source- NCBI BLink). (681 aa)
       
      0.612
Bra032932
AT3G26410 (E=3e-264) | methyltransferase/ nucleic acid binding (473 aa)
     
   
  0.438
Bra025204
AT3G26410 (E=4e-264) | methyltransferase/ nucleic acid binding (474 aa)
     
   
  0.438
Bra040168
AT4G17610 (E=0.0) | tRNA/rRNA methyltransferase (SpoU) family protein (1811 aa)
     
   
  0.410
Bra038036
AT5G01230 (E=7e-176) | FtsJ-like methyltransferase family protein ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (309 aa)
     
   
  0.403
Bra009635
AT5G01230 (E=8e-167) | FtsJ-like methyltransferase family protein ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (310 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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