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Bra000913 protein (Brassica rapa) - STRING interaction network
"Bra000913" - AT4G01870 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000913AT4G01870 (E=0.0) | tolB protein-related (650 aa)    
Predicted Functional Partners:
Bra041099
Uncharacterized protein (698 aa)
         
  0.716
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
         
  0.534
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
         
  0.534
Bra008124
AT1G74000 (E=3e-144) SS3 | SS3 (STRICTOSIDINE SYNTHASE 3); strictosidine synthase (325 aa)
         
  0.486
Bra015547
AT1G07040 (E=7e-162) | unknown protein (361 aa)
     
   
  0.473
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
         
  0.471
Bra038377
AT4G09650 (E=5e-106) ATPD | ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); hydrogen ion transporting ATP synthase, rotational mechanism / proton-transporting ATPase, rotational mechanism (234 aa)
   
        0.464
Bra029511
AT4G04640 (E=2e-165) ATPC1 | ATPC1; enzyme regulator (375 aa)
   
        0.464
Bra023413
AT5G13450 (E=4e-111) | ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative (240 aa)
   
        0.464
Bra022912
AT3G11380 (E=8e-041) | pentatricopeptide (PPR) repeat-containing protein (879 aa)
   
        0.464
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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