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Bra000916 protein (Brassica rapa) - STRING interaction network
"Bra000916" - AT4G01790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000916AT4G01790 (E=4e-051) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-related (148 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra036111
AT5G27120 (E=2e-232) | SAR DNA-binding protein, putative (536 aa)
     
  0.995
Bra020601
AT5G27120 (E=3e-109) | SAR DNA-binding protein, putative (488 aa)
     
  0.995
Bra009978
AT5G27120 (E=4e-233) | SAR DNA-binding protein, putative (537 aa)
     
  0.995
Bra006768
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2093 aa)
     
  0.993
Bra002652
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2113 aa)
     
  0.993
Bra028311
AT5G52470 (E=2e-025) FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | FIB1 (FIBRILLARIN 1); snoRNA binding (189 aa)
     
  0.991
Bra022595
AT4G25630 (E=4e-118) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (291 aa)
     
  0.991
Bra019148
AT4G25630 (E=3e-129) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (307 aa)
     
  0.991
Bra013905
AT4G25630 (E=4e-127) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding (310 aa)
     
  0.991
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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