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Bra000919 protein (Brassica rapa) - STRING interaction network
"Bra000919" - AT4G01650 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000919AT4G01650 (E=3e-123) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Streptomyces cyclase/dehydrase (InterPro-IPR005031); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species- Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source- NCBI BLink). (285 aa)    
Predicted Functional Partners:
Bra029583
AT3G06500 (E=1e-306) | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (652 aa)
   
          0.466
Bra034413
AT1G35580 (E=2e-302) CINV1 | CINV1 (cytosolic invertase 1); beta-fructofuranosidase (544 aa)
   
          0.462
Bra000681
AT4G09510 (E=5e-289) CINV2 | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (527 aa)
   
          0.462
Bra038926
AT1G56560 (E=3e-307) | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (632 aa)
   
          0.461
Bra036761
AT1G35580 (E=0.0) CINV1 | CINV1 (cytosolic invertase 1); beta-fructofuranosidase (551 aa)
   
          0.461
Bra002417
AT5G22510 (E=1e-315) | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (610 aa)
   
          0.461
Bra024527
AT1G22650 (E=1e-292) | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (540 aa)
   
          0.460
Bra040252
AT3G05820 (E=1e-314) | beta-fructofuranosidase/ catalytic (628 aa)
   
          0.459
Bra011567
AT4G34860 (E=0.0) | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (580 aa)
   
          0.459
Bra034659
AT4G34860 (E=1e-290) | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (558 aa)
   
          0.458
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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