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Bra000929.1-P protein (Brassica rapa) - STRING interaction network
"Bra000929.1-P" - AT4G00810 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000929.1-PAT4G00810 (E=1e-040) | 60S acidic ribosomal protein P1 (RPP1B) (113 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra034055
AT3G11250 (E=1e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.999
Bra029752
AT3G11250 (E=3e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.999
Bra001324
AT3G09200 (E=7e-147) | 60S acidic ribosomal protein P0 (RPP0B) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
  0.999
Bra000159
AT2G40010 (E=8e-149) | 60S acidic ribosomal protein P0 (RPP0A) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (319 aa)
   
  0.999
Bra039054
AT3G28500 (E=7e-022) | 60S acidic ribosomal protein P2 (RPP2C) (113 aa)
     
  0.999
Bra034363
AT2G27710 (E=3e-024) | 60S acidic ribosomal protein P2 (RPP2B) (113 aa)
     
  0.999
Bra033049
AT5G40040 (E=3e-021) | 60S acidic ribosomal protein P2 (RPP2E) (114 aa)
     
  0.999
Bra025339
AT3G28500 (E=3e-023) | 60S acidic ribosomal protein P2 (RPP2C) (113 aa)
     
  0.999
Bra012004
AT2G27710 (E=2e-025) | 60S acidic ribosomal protein P2 (RPP2B) (113 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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