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Bra000937 protein (Brassica rapa) - STRING interaction network
"Bra000937" - AT4G01010 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000937AT4G01010 (E=0.0) ATCNGC13, CNGC13 | ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel (705 aa)    
Predicted Functional Partners:
Bra033232
AT4G00630 (E=0.0) KEA2, ATKEA2 | KEA2; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1118 aa)
       
  0.638
Bra033231
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1120 aa)
       
  0.638
Bra032651
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1157 aa)
       
  0.638
Bra032572
AT1G01790 (E=2e-179) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (771 aa)
       
  0.638
Bra029519
AT4G04850 (E=1e-247) KEA3, ATKEA3 | KEA3; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (819 aa)
       
  0.638
Bra031486
AT1G60750 (E=6e-162) | oxidoreductase (336 aa)
       
  0.637
Bra031485
AT1G60750 (E=2e-113) | oxidoreductase (360 aa)
       
  0.637
Bra030661
AT1G06690 (E=2e-206) | aldo/keto reductase family protein (377 aa)
       
  0.637
Bra030584
AT1G04690 (E=1e-189) KAB1, KV-BETA1 | KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); oxidoreductase/ potassium channel (328 aa)
       
  0.637
Bra027142
AT1G60690 (E=1e-136) | aldo/keto reductase family protein (367 aa)
       
  0.637
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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