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Bra000939 protein (Brassica rapa) - STRING interaction network
"Bra000939" - AT4G01040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000939AT4G01040 (E=2e-180) | glycosyl hydrolase family 18 protein (423 aa)    
Predicted Functional Partners:
Bra007726
AT3G63090 (E=1e-123) | ubiquitin thiolesterase (251 aa)
           
  0.604
Bra011447
AT4G33495 (E=8e-187) RPD1 | RPD1 (ROOT PRIMORDIUM DEFECTIVE 1); ubiquitin thiolesterase (355 aa)
           
  0.573
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
           
  0.510
Bra020951
AT4G19810 (E=2e-185) | glycosyl hydrolase family 18 protein (380 aa)
           
  0.483
Bra013426
AT4G19810 (E=7e-139) | glycosyl hydrolase family 18 protein (269 aa)
           
  0.483
Bra000892
AT4G19750 (E=9e-133) | glycosyl hydrolase family 18 protein (362 aa)
           
  0.483
Bra035869
AT5G62990 (E=5e-183) emb1692 | emb1692 (embryo defective 1692); ubiquitin thiolesterase (493 aa)
           
  0.473
Bra037391
AT4G01030 (E=3e-244) | pentatricopeptide (PPR) repeat-containing protein (906 aa)
           
  0.448
Bra030973
AT1G52700 (E=3e-134) | phospholipase/carboxylesterase family protein (255 aa)
           
  0.433
Bra030370
AT1G52700 (E=4e-136) | phospholipase/carboxylesterase family protein (263 aa)
           
  0.433
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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