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Bra000940 protein (Brassica rapa) - STRING interaction network
"Bra000940" - AT4G01050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000940AT4G01050 (E=9e-113) | hydroxyproline-rich glycoprotein family protein (501 aa)    
Predicted Functional Partners:
Bra036258
AT4G02530 (E=4e-074) | chloroplast thylakoid lumen protein (219 aa)
     
        0.534
Bra039115
AT3G01480 (E=7e-188) CYP38 | CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase (428 aa)
     
        0.493
Bra029402
AT5G24340 (E=2e-162) | 3’-5’ exonuclease domain-containing protein (469 aa)
           
  0.414
Bra020781
AT3G06060 (E=1e-144) | short-chain dehydrogenase/reductase (SDR) family protein (323 aa)
           
  0.414
Bra021327
AT1G54780 (E=3e-122) | thylakoid lumen 18.3 kDa protein (284 aa)
     
        0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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