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Bra000941 protein (Brassica rapa) - STRING interaction network
"Bra000941" - AT4G01060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000941AT4G01060 (E=8e-027) ETC3, CPL3 | CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor (76 aa)    
Predicted Functional Partners:
Bra025508
AT5G41315 (E=2e-303) GL3, MYC6.2 | GL3 (GLABROUS 3); protein binding / transcription factor (629 aa)
       
 
  0.679
Bra037343
AT4G00480 (E=4e-125) ATMYC1, myc1 | myc-related transcription factor (MYC1) (711 aa)
       
 
  0.657
Bra027796
AT1G63650 (E=8e-300) EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (606 aa)
       
 
  0.657
Bra027653
AT1G63650 (E=2e-276) EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (596 aa)
       
 
  0.657
Bra000970
AT4G00480 (E=2e-199) ATMYC1, myc1 | myc-related transcription factor (MYC1) (654 aa)
       
 
  0.657
Bra009770
AT5G24520 (E=1e-176) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (337 aa)
           
  0.476
Bra003535
AT1G79840 (E=0.0) GL2 | GL2 (GLABRA 2); DNA binding / transcription factor (750 aa)
           
  0.476
Bra028724
AT5G06650 (E=1e-056) GIS2 | GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding (182 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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