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Bra000943 protein (Brassica rapa) - STRING interaction network
"Bra000943" - AT4G01090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000943AT4G01090 (E=2e-079) | extra-large G-protein-related (600 aa)    
Predicted Functional Partners:
Bra039652
AT1G49850 (E=4e-075) | zinc finger (C3HC4-type RING finger) family protein (243 aa)
       
      0.489
Bra036832
AT3G51180 (E=3e-160) | zinc finger (CCCH-type) family protein (496 aa)
       
      0.489
Bra033264
AT1G01440 (E=2e-115) | extra-large G-protein-related (581 aa)
       
   
0.489
Bra028196
AT5G38640 (E=5e-279) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (630 aa)
       
      0.489
Bra015721
AT1G76760 (E=5e-071) ATY1, TRX-Y1 | ATY1 (ARABIDOPSIS THIOREDOXIN Y1); electron carrier/ protein disulfide oxidoreductase (172 aa)
       
      0.489
Bra009045
AT5G10270 (E=3e-212) CDKC;1 | CDKC;1 (Cyclin-dependent kinase C;1); kinase (509 aa)
       
      0.489
Bra033990
AT2G21840 (E=1e-223) | protein binding / zinc ion binding (774 aa)
       
      0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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