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Bra000947 protein (Brassica rapa) - STRING interaction network
"Bra000947" - AT4G01150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000947AT4G01150 (E=5e-068) | unknown protein (164 aa)    
Predicted Functional Partners:
Bra021327
AT1G54780 (E=3e-122) | thylakoid lumen 18.3 kDa protein (284 aa)
   
        0.644
Bra030660
AT1G06680 (E=3e-113) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (261 aa)
   
        0.610
Bra015520
AT1G06680 (E=2e-119) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
        0.604
Bra018294
AT1G06680 (E=5e-122) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
        0.601
Bra031534
AT1G06680 (E=1e-120) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
        0.582
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
        0.566
Bra030268
AT2G21960 (E=2e-141) | unknown protein (327 aa)
   
        0.545
Bra022262
AT3G17930 (E=2e-062) | unknown protein (188 aa)
   
        0.536
Bra004459
AT2G47400 (E=4e-057) CP12-1, CP12 | CP12-1 (127 aa)
   
        0.534
Bra014946
AT3G23400 (E=6e-083) | plastid-lipid associated protein PAP / fibrillin family protein (277 aa)
   
        0.529
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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