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Bra000950 protein (Brassica rapa) - STRING interaction network
"Bra000950" - AT4G01220 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000950AT4G01220 (E=4e-171) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endoplasmic reticulum; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Reticulon (InterPro-IPR003388); BEST Arabidopsis thaliana protein match is- RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR-AT4G01770.1); Has 188 Blast hits to 185 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 21 (source- NCBI BLink). (360 aa)    
Predicted Functional Partners:
Bra024896
AT2G01220 (E=8e-194) | nucleotidyltransferase (403 aa)
           
  0.505
Bra015104
AT3G25140 (E=6e-297) GAUT8, QUA1 | QUA1 (QUASIMODO 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (569 aa)
           
  0.476
Bra013229
AT3G25140 (E=3e-290) GAUT8, QUA1 | QUA1 (QUASIMODO 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (558 aa)
           
  0.476
Bra019569
AT3G48820 (E=6e-220) | glycosyl transferase family 29 protein / sialyltransferase family protein (473 aa)
           
  0.456
Bra007573
AT3G61130 (E=0.0) GAUT1, LGT1 | GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (673 aa)
           
  0.418
Bra007967
AT1G71180 (E=6e-142) | 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (304 aa)
           
  0.416
Bra028472
AT5G40720 (E=7e-223) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF23 (InterPro-IPR008166); BEST Arabidopsis thaliana protein match is- zinc finger (C3HC4-type RING finger) family protein (TAIR-AT3G27330.1); Has 216 Blast hits to 216 proteins in 64 species- Archae - 0; Bacteria - 120; Metazoa - 2; Fungi - 4; Plants - 57; Viruses - 0; Other Eukaryotes - 33 (source- NCBI BLink). (664 aa)
           
  0.410
Bra011760
AT4G37420 (E=5e-262) | unknown protein (572 aa)
           
  0.410
Bra024421
AT3G49720 (E=6e-133) | unknown protein (261 aa)
           
  0.406
Bra005369
AT2G35100 (E=1e-216) ARAD1 | ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups (450 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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