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Bra000953 protein (Brassica rapa) - STRING interaction network
"Bra000953" - AT4G01310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000953AT4G01310 (E=2e-127) | ribosomal protein L5 family protein (264 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
 
  0.999
Bra025017
AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family (1149 aa)
   
  0.999
Bra016064
ATCG00790 (E=6e-054) RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit (326 aa)
 
  0.999
Bra041145
ATCG01240 (E=2e-067) RPS7.2 | 30S chloroplast ribosomal protein S7 (156 aa)
 
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra040982
ATCG00830 (E=9e-059) RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex (165 aa)
 
  0.999
Bra032481
AT1G05190 (E=1e-109) emb2394 | emb2394 (embryo defective 2394); structural constituent of ribosome (224 aa)
 
  0.999
Bra015397
AT1G05190 (E=1e-116) emb2394 | emb2394 (embryo defective 2394); structural constituent of ribosome (223 aa)
 
  0.999
Bra034290
AT1G17560 (E=2e-050) HLL | HLL (HUELLENLOS); structural constituent of ribosome (193 aa)
 
  0.999
Bra022217
AT3G17465 (E=4e-122) RPL3P | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID); structural constituent of ribosome (255 aa)
 
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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