STRINGSTRING
Bra000954 protein (Brassica rapa) - STRING interaction network
"Bra000954" - AT4G01320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000954AT4G01320 (E=2e-221) ATSTE24, STE24 | ATSTE24; endopeptidase/ metalloendopeptidase (424 aa)    
Predicted Functional Partners:
Bra005985
AT5G08335 (E=3e-089) ATSTE14B, ATICMTB, ICMTB | ATSTE14B; protein-S-isoprenylcysteine O-methyltransferase (197 aa)
     
  0.957
Bra023542
AT5G15860 (E=1e-220) ATPCME | ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase (431 aa)
         
  0.946
Bra025593
AT5G40280 (E=2e-201) ERA1, ATFTB, WIG | ERA1 (ENHANCED RESPONSE TO ABA 1); farnesyltranstransferase/ protein farnesyltransferase (445 aa)
         
  0.944
Bra039538
AT3G59380 (E=2e-158) FTA, PLP, ATFTA, PFT/PGGT-IALPHA | FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (325 aa)
     
 
  0.944
Bra011010
AT1G26120 (E=4e-193) | esterase-related (460 aa)
         
  0.933
Bra024729
AT1G26120 (E=2e-198) | esterase-related (452 aa)
         
  0.933
Bra028579
AT5G10540 (E=0.0) | peptidase M3 family protein / thimet oligopeptidase family protein (701 aa)
       
 
  0.893
Bra024401
AT5G65620 (E=0.0) | peptidase M3 family protein / thimet oligopeptidase family protein (711 aa)
       
 
  0.893
Bra006067
AT5G10540 (E=0.0) | peptidase M3 family protein / thimet oligopeptidase family protein (695 aa)
       
 
  0.893
Bra004244
AT1G67690 (E=1e-266) | metalloendopeptidase (956 aa)
       
 
  0.893
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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