STRINGSTRING
Bra000966 protein (Brassica rapa) - STRING interaction network
"Bra000966" - AT4G00585 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000966AT4G00585 (E=2e-038) | unknown protein (86 aa)    
Predicted Functional Partners:
Bra026218
AT1G14450 (E=1e-035) | unknown protein (74 aa)
     
   
  0.641
Bra034003
Uncharacterized protein (91 aa)
     
   
  0.622
Bra004221
Uncharacterized protein (91 aa)
     
   
  0.622
Bra018042
AT3G48680 (E=3e-135) GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase (256 aa)
     
   
  0.583
Bra004256
AT1G67785 (E=1e-030) | unknown protein (63 aa)
     
   
  0.582
Bra012077
AT5G66510 (E=5e-125) GAMMA CA3 | GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase (253 aa)
           
  0.573
Bra037584
AT3G18410 (E=1e-059) | NADH-ubiquinone oxidoreductase-related (106 aa)
     
   
  0.562
Bra007427.1-P
AT3G18410 (E=6e-060) | NADH-ubiquinone oxidoreductase-related (106 aa)
     
   
  0.562
Bra026590
AT2G02510 (E=3e-038) | unknown protein (72 aa)
     
   
  0.561
Bra004070
AT1G67785 (E=1e-029) | unknown protein (63 aa)
     
   
  0.555
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]