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Bra000970 protein (Brassica rapa) - STRING interaction network
"Bra000970" - AT4G00480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000970AT4G00480 (E=2e-199) ATMYC1, myc1 | myc-related transcription factor (MYC1) (654 aa)    
Predicted Functional Partners:
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
       
 
  0.751
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
       
 
  0.751
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
       
 
  0.751
Bra009770
AT5G24520 (E=1e-176) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (337 aa)
       
 
  0.684
Bra008740
AT5G14750 (E=3e-094) WER, ATMYB66, WER1 | ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator (197 aa)
       
 
  0.666
Bra039283
AT2G46410 (E=9e-039) CPC | CPC (CAPRICE); DNA binding / transcription factor (85 aa)
       
 
  0.657
Bra037388
AT4G01060 (E=2e-021) ETC3, CPL3 | CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor (77 aa)
       
 
  0.657
Bra022637
AT5G53200 (E=2e-025) TRY | TRY (TRIPTYCHON); DNA binding / transcription factor (75 aa)
       
 
  0.657
Bra008539
AT4G01060 (E=4e-030) ETC3, CPL3 | CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor (77 aa)
       
 
  0.657
Bra000941
AT4G01060 (E=8e-027) ETC3, CPL3 | CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor (76 aa)
       
 
  0.657
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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