STRINGSTRING
Bra000972 protein (Brassica rapa) - STRING interaction network
"Bra000972" - AT4G00450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000972AT4G00450 (E=0.0) CRP | CRP (CRYPTIC PRECOCIOUS) (2219 aa)    
Predicted Functional Partners:
Bra037748
AT5G63610 (E=1e-234) HEN3, CDKE;1, ATCDK8 | CDKE;1 (CYCLIN-DEPENDENT KINASE E;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (468 aa)
     
 
  0.961
Bra040401
AT3G04740 (E=0.0) SWP, MED14, ATMED14 | SWP (STRUWWELPETER) (1634 aa)
     
 
  0.952
Bra037473
AT5G48640 (E=3e-108) | cyclin family protein (209 aa)
     
 
  0.949
Bra020686
AT5G48630 (E=1e-139) | cyclin family protein (253 aa)
     
 
  0.949
Bra028845
AT5G03500 (E=6e-063) | transcription coactivator (205 aa)
       
 
  0.942
Bra009544
AT5G03500 (E=2e-072) | transcription coactivator (168 aa)
       
 
  0.942
Bra020074
AT5G19910 (E=3e-071) | SOH1 family protein (191 aa)
       
 
  0.941
Bra002273
AT5G19910 (E=9e-081) | SOH1 family protein (198 aa)
       
 
  0.941
Bra029517
AT4G04780 (E=1e-040) MED21 | MED21 (MEDIATOR 21) (148 aa)
       
 
  0.936
Bra018507
AT4G04780 (E=3e-031) MED21 | MED21 (MEDIATOR 21) (103 aa)
       
 
  0.936
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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