STRINGSTRING
Bra000976 protein (Brassica rapa) - STRING interaction network
"Bra000976" - AT4G00370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000976AT4G00370 (E=7e-161) ANTR2, PHT4;4 | ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter (534 aa)    
Predicted Functional Partners:
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
           
  0.483
Bra003254
AT3G56930 (E=9e-238) | zinc finger (DHHC type) family protein (475 aa)
           
  0.483
Bra000529
AT2G26990 (E=2e-233) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (439 aa)
           
  0.483
Bra039622
AT2G18260 (E=4e-112) SYP112, ATSYP112 | SYP112 (SYNTAXIN OF PLANTS 112); SNAP receptor (288 aa)
     
 
    0.420
Bra036431
AT3G03800 (E=6e-062) SYP131, ATSYP131 | SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor (278 aa)
     
 
    0.420
Bra034808
AT3G11820 (E=5e-080) SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 | SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor (325 aa)
     
 
    0.420
Bra034202
AT4G03330 (E=8e-151) SYP123, ATSYP123 | SYP123 (SYNTAXIN OF PLANTS 123); SNAP receptor (305 aa)
     
 
    0.420
Bra033436
AT3G52400 (E=6e-134) SYP122, ATSYP122 | SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor (342 aa)
     
 
    0.420
Bra031972
AT3G03800 (E=2e-076) SYP131, ATSYP131 | SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor (280 aa)
     
 
    0.420
Bra031761
AT1G11250 (E=4e-075) SYP125, ATSYP125 | SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor (165 aa)
     
 
    0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]