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Bra000979 protein (Brassica rapa) - STRING interaction network
"Bra000979" - AT4G00120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000979AT4G00120 (E=6e-031) IND1, GT140, IND, EDA33 | IND (INDEHISCENT); DNA binding / transcription factor (185 aa)    
Predicted Functional Partners:
Bra010591
AT4G36930 (E=4e-101) SPT | SPT (SPATULA); DNA binding / transcription factor (341 aa)
       
 
0.680
Bra011740
AT4G36930 (E=1e-122) SPT | SPT (SPATULA); DNA binding / transcription factor (354 aa)
       
 
0.679
Bra029347
AT5G60910 (E=3e-124) AGL8, FUL | AGL8 (agamous-like 8); transcription factor (240 aa)
           
  0.518
Bra004716
AT2G42830 (E=4e-115) SHP2, AGL5 | SHP2 (SHATTERPROOF 2); protein binding / transcription factor (244 aa)
           
  0.489
Bra014552
AT3G58780 (E=2e-129) SHP1, AGL1 | SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor (248 aa)
           
  0.487
Bra028883
AT5G02030 (E=1e-229) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (584 aa)
           
  0.418
Bra009618
AT5G02030 (E=9e-240) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (586 aa)
           
  0.418
Bra017754
AT4G36260 (E=1e-102) STY2, SRS2 | STY2 (STYLISH 2); transcription factor (313 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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