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Bra000981 protein (Brassica rapa) - STRING interaction network
"Bra000981" - AT3G01990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000981AT3G01990 (E=6e-209) ACR6 | ACR6; amino acid binding (463 aa)    
Predicted Functional Partners:
Bra031258
AT1G51600 (E=2e-100) ZML2, TIFY2A | TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (321 aa)
       
      0.489
Bra014292
AT1G51600 (E=2e-114) ZML2, TIFY2A | TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (260 aa)
       
      0.489
Bra010996
AT1G25490 (E=0.0) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (588 aa)
       
      0.489
Bra026020
AT1G16870 (E=8e-213) | mitochondrial 28S ribosomal protein S29-related (485 aa)
           
  0.481
Bra033493
AT4G15545 (E=8e-139) | unknown protein (335 aa)
           
  0.480
Bra033831
AT2G39570 (E=8e-067) | ACT domain-containing protein (433 aa)
           
  0.457
Bra023559
AT5G16290 (E=2e-238) | acetolactate synthase small subunit, putative (475 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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