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Bra000988 protein (Brassica rapa) - STRING interaction network
"Bra000988" - AT3G01800 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000988AT3G01800 (E=7e-099) | ribosome recycling factor family protein / ribosome releasing factor family protein (268 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.989
Bra000339
AT2G44060 (E=9e-153) | late embryogenesis abundant family protein / LEA family protein (777 aa)
   
  0.974
Bra004722
AT2G42710 (E=2e-119) | ribosomal protein L1 family protein (388 aa)
   
  0.973
Bra027021
AT1G62750 (E=0.0) ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding (775 aa)
   
  0.970
Bra004884
AT2G45030 (E=0.0) | mitochondrial elongation factor, putative (755 aa)
   
  0.970
Bra040702
AT3G01790 (E=4e-082) | ribosomal protein L13 family protein (193 aa)
   
  0.967
Bra035054
AT1G78630 (E=3e-131) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (240 aa)
   
  0.967
Bra008373
AT1G78630 (E=3e-122) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (242 aa)
   
  0.967
Bra000989
AT3G01790 (E=2e-094) | ribosomal protein L13 family protein (197 aa)
   
  0.967
Bra025534
AT5G40950 (E=4e-103) RPL27 | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome (198 aa)
   
  0.967
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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