STRINGSTRING
Bra000991 protein (Brassica rapa) - STRING interaction network
"Bra000991" - AT3G01740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000991AT3G01740 (E=8e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ribosomal protein L37, mitochondrial (InterPro-IPR013870); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G14290.1); Has 117 Blast hits to 117 proteins in 58 species- Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 22; Plants - 27; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (125 aa)    
Predicted Functional Partners:
Bra037787
AT5G64650 (E=2e-068) | ribosomal protein L17 family protein (160 aa)
     
 
    0.927
Bra014830
AT3G54210 (E=4e-015) | ribosomal protein L17 family protein (113 aa)
     
 
    0.927
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
 
    0.927
Bra006032
AT5G09770 (E=1e-077) | ribosomal protein L17 family protein (159 aa)
     
 
    0.927
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
     
 
    0.927
Bra017876
AT4G39880 (E=4e-072) | ribosomal protein L23 family protein (176 aa)
     
 
    0.922
Bra011825
AT4G39880 (E=3e-073) | ribosomal protein L23 family protein (179 aa)
     
 
    0.922
Bra023302
AT1G32990 (E=3e-087) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (219 aa)
     
    0.828
Bra017715
AT4G35490 (E=1e-068) MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome (156 aa)
     
    0.828
Bra017714
AT4G35490 (E=4e-072) MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome (156 aa)
     
    0.828
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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