STRINGSTRING
Bra000994 protein (Brassica rapa) - STRING interaction network
"Bra000994" - AT3G01710 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000994AT3G01710 (E=2e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Targeting for Xklp2 (InterPro-IPR009675); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G27350.1); Has 1029 Blast hits to 851 proteins in 111 species- Archae - 0; Bacteria - 24; Metazoa - 456; Fungi - 52; Plants - 192; Viruses - 7; Other Eukaryotes - 298 (source- NCBI BLink). (353 aa)    
Predicted Functional Partners:
Bra033881
AT3G23090 (E=7e-114) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- inflorescence meristem, leaf apex, hypocotyl, flower, root; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Targeting for Xklp2 (InterPro-IPR009675); BEST Arabidopsis thaliana protein match is- WDL1 (TAIR-AT3G04630.3); Has 483 Blast hits to 450 proteins in 87 species- Archae - 2; Bacteria - 15; Metazoa - 188; Fungi - 17; Plants - 148; Viruses - 0; Other Eukaryotes - 113 (source- NCBI BLink). (338 aa)
           
  0.503
Bra012357
AT1G23060 (E=8e-066) | unknown protein (327 aa)
           
  0.502
Bra035605
AT5G56150 (E=2e-082) UBC30 | UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase (148 aa)
           
  0.454
Bra010004
AT5G28646 (E=2e-057) WVD2 | WVD2 (238 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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