STRINGSTRING
Bra000996 protein (Brassica rapa) - STRING interaction network
"Bra000996" - AT3G01670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000996AT3G01670 (E=0.0) | unknown protein (832 aa)    
Predicted Functional Partners:
Bra040700
AT3G01680 (E=0.0) | unknown protein (745 aa)
     
 
0.733
Bra040547
AT3G01680 (E=0.0) | unknown protein (739 aa)
     
 
0.732
Bra036832
AT3G51180 (E=3e-160) | zinc finger (CCCH-type) family protein (496 aa)
       
      0.489
Bra007057
AT3G54230 (E=3e-302) | nucleic acid binding / nucleotide binding / zinc ion binding (985 aa)
       
      0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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