STRINGSTRING
Bra000998 protein (Brassica rapa) - STRING interaction network
"Bra000998" - AT3G01640 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000998AT3G01640 (E=5e-189) | GHMP kinase family protein (360 aa)    
Predicted Functional Partners:
Bra029861
AT3G10700 (E=2e-121) | GHMP kinase family protein (385 aa)
         
  0.962
Bra007797
AT5G52560 (E=0.0) ATUSP | ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE); UTP-monosaccharide-1-phosphate uridylyltransferase/ UTP-arabinose-1-phosphate uridylyltransferase/ UTP-galactose-1-phosphate uridylyltransferase/ UTP-glucose-1-phosphate uridylyltransferase/ UTP-xy (618 aa)
         
  0.950
Bra033531
AT4G16130 (E=0.0) ARA1, ISA1, ATISA1 | ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (889 aa)
         
  0.903
Bra002849
AT3G42850 (E=0.0) | galactokinase, putative (972 aa)
         
  0.903
Bra024708
AT1G26570 (E=1e-259) UGD1, ATUGD1 | UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding / catalytic/ coenzyme binding / oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (481 aa)
           
  0.645
Bra038405
AT1G31070 (E=6e-279) | UDP-N-acetylglucosamine pyrophosphorylase-related (503 aa)
         
  0.564
Bra025017
AT5G46420 (E=0.0) | 16S rRNA processing protein RimM family (1149 aa)
         
  0.564
Bra023160
AT1G31070 (E=3e-272) | UDP-N-acetylglucosamine pyrophosphorylase-related (476 aa)
         
  0.564
Bra005373
AT2G35020 (E=8e-245) | UTP--glucose-1-phosphate uridylyltransferase family protein (501 aa)
         
  0.564
Bra040277
AT3G06580 (E=1e-263) GAL1, GALK | GALK; ATP binding / galactokinase (496 aa)
         
  0.563
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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