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Bra001002 protein (Brassica rapa) - STRING interaction network
"Bra001002" - AT3G01570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001002AT3G01570 (E=5e-071) | glycine-rich protein / oleosin (193 aa)    
Predicted Functional Partners:
Bra009542
AT5G03240 (E=6e-126) UBQ3 | UBQ3 (POLYUBIQUITIN 3); protein binding (230 aa)
       
      0.612
Bra010570
AT4G36700 (E=2e-172) | cupin family protein (576 aa)
     
   
  0.527
Bra022333
AT3G18570 (E=6e-063) | glycine-rich protein / oleosin (165 aa)
     
   
  0.484
Bra001711
AT3G18570 (E=5e-049) | glycine-rich protein / oleosin (176 aa)
     
   
  0.484
Bra023813
AT3G22640 (E=5e-171) PAP85 | PAP85; nutrient reservoir (486 aa)
     
   
  0.461
Bra026407
AT4G26740 (E=2e-137) ATS1 | ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding (245 aa)
     
   
  0.454
Bra024462
AT2G18540 (E=1e-081) | cupin family protein (657 aa)
     
   
  0.425
Bra017772
AT4G36700 (E=2e-153) | cupin family protein (416 aa)
     
   
  0.414
Bra017229
AT2G36640 (E=2e-112) ATECP63 | ATECP63 (EMBRYONIC CELL PROTEIN 63) (398 aa)
     
   
  0.410
Bra034020
AT1G67120 (E=0.0) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding ; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits (5408 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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