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Bra001006 protein (Brassica rapa) - STRING interaction network
"Bra001006" - AT3G01400 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001006AT3G01400 (E=4e-149) | armadillo/beta-catenin repeat family protein (354 aa)    
Predicted Functional Partners:
Bra031450
AT1G61150 (E=2e-105) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif, subgroup (InterPro-IPR013720), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G11110.1); Has 740 Blast hits to 708 proteins in 137 species- Archae - 0; Bacteria - 0; M [...] (242 aa)
           
  0.489
Bra029733
AT3G08943 (E=0.0) | binding / protein transporter (872 aa)
           
  0.489
Bra029727
AT3G08890 (E=3e-093) | unknown protein (170 aa)
           
  0.487
Bra017032
AT2G40110 (E=1e-071) | yippee family protein (130 aa)
           
  0.487
Bra009351
AT5G08560 (E=2e-272) | transducin family protein / WD-40 repeat family protein (580 aa)
           
  0.487
Bra003024
AT5G53940 (E=3e-068) | yippee family protein (126 aa)
           
  0.487
Bra038574
AT1G61150 (E=1e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif, subgroup (InterPro-IPR013720), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G11110.1); Has 740 Blast hits to 708 proteins in 137 species- Archae - 0; Bacteria - 0; M [...] (351 aa)
           
  0.477
Bra017126
AT5G37070 (E=2e-089) | unknown protein (166 aa)
           
  0.475
Bra001045
AT3G02460 (E=3e-185) | plant adhesion molecule, putative (349 aa)
           
  0.474
Bra011793
AT4G37880 (E=1e-179) | protein binding / zinc ion binding (381 aa)
           
  0.455
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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