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Bra001007 protein (Brassica rapa) - STRING interaction network
"Bra001007" - AT3G01390 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra001007AT3G01390 (E=3e-013) VMA10, AVMA10 | VMA10 (VACUOLAR MEMBRANE ATPASE 10); hydrogen ion transporting ATP synthase, rotational mechanism (88 aa)    
Predicted Functional Partners:
Bra000871
AT4G02620 (E=6e-066) | vacuolar ATPase subunit F family protein ; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (128 aa)
     
  0.982
Bra018537.1-P
AT4G02620 (E=7e-023) | vacuolar ATPase subunit F family protein (49 aa)
     
  0.982
Bra000871.1-P
AT4G02620 (E=6e-066) | vacuolar ATPase subunit F family protein (128 aa)
     
  0.982
Bra026227
AT1G30580 (E=2e-186) | GTP binding ; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (644 aa)
     
  0.981
Bra014555
AT3G58730 (E=3e-050) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (202 aa)
     
  0.980
Bra007415
AT3G58730 (E=7e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
     
  0.980
Bra003352
AT3G58730 (E=9e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
     
  0.980
Bra000737
AT4G11150 (E=2e-113) TUF, emb2448, TUFF, VHA-E1 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (431 aa)
     
  0.980
Bra035248
AT1G64200 (E=3e-082) VHA-E3 | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3); proton-transporting ATPase, rotational mechanism (217 aa)
     
  0.980
Bra033155
AT4G11150 (E=2e-120) TUF, emb2448, TUFF, VHA-E1 | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (230 aa)
     
  0.980
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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