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Bra001009 protein (Brassica rapa) - STRING interaction network
"Bra001009" - AT3G01290 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001009AT3G01290 (E=2e-140) | band 7 family protein (286 aa)    
Predicted Functional Partners:
Bra041120
ATCG00120 (E=1e-229) ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. ; Produces ATP from ADP in the presence of a proton gradient across the membrane (504 aa)
   
 
  0.638
Bra040490
AT2G07698 (E=1e-039) | ATP synthase alpha chain, mitochondrial, putative (99 aa)
   
 
  0.638
Bra013947
AT4G26090 (E=0.0) RPS2 | RPS2 (RESISTANT TO P. SYRINGAE 2); protein binding (907 aa)
       
      0.616
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
   
   
  0.585
Bra026978
AT1G12210 (E=8e-304) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (890 aa)
       
      0.575
Bra026977
AT1G12210 (E=0.0) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (886 aa)
       
      0.575
Bra026924
AT1G12210 (E=2e-203) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (847 aa)
       
      0.575
Bra026923
AT1G12210 (E=1e-205) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (852 aa)
       
      0.575
Bra026682
AT1G12210 (E=4e-231) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (837 aa)
       
      0.575
Bra018245
AT5G63020 (E=2e-206) | disease resistance protein (CC-NBS-LRR class), putative (860 aa)
       
      0.575
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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