STRINGSTRING
Bra001017 protein (Brassica rapa) - STRING interaction network
"Bra001017" - AT3G01210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001017AT3G01210 (E=3e-098) | nucleic acid binding / oxidoreductase (252 aa)    
Predicted Functional Partners:
Bra029863
AT3G10750 (E=3e-048) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- FBD (InterPro-IPR013596), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT1G05080.1); Has 597 Blast hits to 573 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (373 aa)
           
  0.453
Bra037190
AT5G66050 (E=2e-115) | LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF151 (InterPro-IPR003729); BEST Arabidopsis thaliana protein match is- wound-responsive family protein (TAIR-AT1G19660.2); Has 338 Blast hits to 338 proteins in 128 species- Archae - 11; Bacteria - 214; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source- NCBI BLink). (242 aa)
           
  0.414
Bra033269
AT1G01320 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein (1773 aa)
           
  0.414
Bra019833
AT1G11740 (E=7e-157) | ankyrin repeat family protein (570 aa)
           
  0.414
Bra016506
AT1G19380 (E=8e-053) | unknown protein (149 aa)
           
  0.414
Bra009796
AT5G24830 (E=3e-263) | pentatricopeptide (PPR) repeat-containing protein (592 aa)
           
  0.414
Bra007883
AT1G69800 (E=3e-187) | CBS domain-containing protein (446 aa)
           
  0.414
Bra035671
AT2G28780 (E=0.0) | unknown protein (793 aa)
           
  0.412
Bra011926
AT2G28780 (E=0.0) | unknown protein (801 aa)
           
  0.412
Bra027438
AT3G13410 (E=4e-138) | unknown protein (318 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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