STRINGSTRING
Bra001019.1-P protein (Brassica rapa) - STRING interaction network
"Bra001019.1-P" - AT3G01130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001019.1-PAT3G01130 (E=1e-023) | unknown protein (53 aa)    
Predicted Functional Partners:
Bra023499
AT5G14980 (E=2e-160) | esterase/lipase/thioesterase family protein (1202 aa)
           
  0.574
Bra023995
AT4G31570 (E=0.0) | unknown protein (2699 aa)
           
  0.479
Bra033576
AT4G38810 (E=8e-185) | calcium-binding EF hand family protein (375 aa)
           
  0.477
Bra011283
AT4G31570 (E=0.0) | unknown protein (1241 aa)
           
  0.449
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]