STRINGSTRING
Bra001024 protein (Brassica rapa) - STRING interaction network
"Bra001024" - AT3G01050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001024AT3G01050 (E=5e-048) MUB1 | MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (118 aa)    
Predicted Functional Partners:
Bra038217
AT3G19553 (E=5e-223) | amino acid permease family protein (478 aa)
           
  0.414
Bra005585
AT2G32350 (E=3e-124) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein modification process; LOCATED IN- cellular_component unknown; EXPRESSED IN- flower; EXPRESSED DURING- petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Ubiquitin (InterPro-IPR000626); BEST Arabidopsis thaliana protein match is- ubiquitin family protein (TAIR-AT4G05230.1); Has 132 Blast hits to 112 proteins in 46 species- Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 1; Plants - 50; Viruses - 12; Other Eukaryotes - 35 (source- NCBI BLink). (242 aa)
           
  0.412
Bra015709
AT1G76940 (E=2e-068) | RNA recognition motif (RRM)-containing protein (230 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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