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Bra001028 protein (Brassica rapa) - STRING interaction network
"Bra001028" - AT3G02080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001028AT3G02080 (E=1e-077) | 40S ribosomal protein S19 (RPS19A) (143 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra016981
AT2G40610 (E=5e-124) ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11 | ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (786 aa)
     
  0.999
Bra029857
AT3G10620 (E=6e-093) ATNUDX26 | ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (336 aa)
   
  0.999
Bra027325
AT1G29970 (E=7e-104) RPL18AA | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome (293 aa)
   
  0.999
Bra022978
AT2G34480 (E=2e-087) | 60S ribosomal protein L18A (RPL18aB) (211 aa)
   
  0.999
Bra005421
AT2G34480 (E=1e-101) | 60S ribosomal protein L18A (RPL18aB) (178 aa)
   
  0.999
Bra010805
AT2G34480 (E=6e-093) | 60S ribosomal protein L18A (RPL18aB) (214 aa)
   
  0.999
Bra005421.1-P
AT2G34480 (E=1e-101) | 60S ribosomal protein L18A (RPL18aB) (178 aa)
   
  0.999
Bra001559
AT2G34480 (E=2e-081) | 60S ribosomal protein L18A (RPL18aB) (150 aa)
   
  0.999
Bra000887
AT1G02780 (E=1e-073) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome (189 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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