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Bra001032 protein (Brassica rapa) - STRING interaction network
"Bra001032" - AT3G02150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001032AT3G02150 (E=2e-096) PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor (538 aa)    
Predicted Functional Partners:
Bra018126
AT3G47620 (E=2e-126) AtTCP14 | AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14); transcription factor (466 aa)
       
 
  0.602
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
       
      0.515
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
       
      0.515
Bra013289
AT4G18170 (E=1e-121) WRKY28, ATWRKY28 | WRKY28; transcription factor (308 aa)
       
      0.512
Bra012614
AT4G18170 (E=3e-138) WRKY28, ATWRKY28 | WRKY28; transcription factor (312 aa)
       
      0.512
Bra004407
AT1G69690 (E=2e-098) | TCP family transcription factor, putative (321 aa)
       
 
  0.495
Bra027886
AT1G58100 (E=4e-120) | TCP family transcription factor, putative (394 aa)
       
 
  0.479
Bra000395
AT2G45680 (E=9e-099) | TCP family transcription factor, putative (311 aa)
       
 
  0.479
Bra008001
AT1G72010 (E=3e-117) | TCP family transcription factor, putative (374 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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