STRINGSTRING
Bra001034 protein (Brassica rapa) - STRING interaction network
"Bra001034" - AT3G02170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001034AT3G02170 (E=6e-289) LNG2 | LNG2 (LONGIFOLIA2) (857 aa)    
Predicted Functional Partners:
Bra003203
AT3G55000 (E=1e-109) TON1A, TON1 | TON1A (TONNEAU 1) (257 aa)
       
 
  0.893
Bra007125
AT3G55005 (E=1e-104) TON1B | TON1B (tonneau 1b) (251 aa)
       
 
  0.628
Bra006332
AT5G15880 (E=3e-142) | unknown protein (345 aa)
           
  0.477
Bra002072
AT2G17550 (E=3e-314) | unknown protein (768 aa)
     
   
  0.409
Bra036598
AT5G26910 (E=2e-207) | unknown protein (814 aa)
           
  0.408
Bra011058
AT4G28760 (E=3e-208) | unknown protein (837 aa)
           
  0.408
Bra010062
AT5G62170 (E=5e-249) | unknown protein (706 aa)
           
  0.408
Bra033377
AT1G03150 (E=1e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (283 aa)
           
  0.406
Bra032556
AT1G03140 (E=3e-174) | splicing factor Prp18 family protein (415 aa)
           
  0.406
Bra030520
AT1G03140 (E=7e-159) | splicing factor Prp18 family protein (425 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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