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Bra001045 protein (Brassica rapa) - STRING interaction network
"Bra001045" - AT3G02460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001045AT3G02460 (E=3e-185) | plant adhesion molecule, putative (349 aa)    
Predicted Functional Partners:
Bra038371
AT4G09720 (E=3e-110) ATRABG3A | Ras-related GTP-binding protein, putative (206 aa)
     
 
  0.632
Bra037557
AT3G18820 (E=8e-102) ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding (182 aa)
     
 
  0.632
Bra036456
AT1G49300 (E=5e-047) ATRAB7, ATRABG3E, RABG3E | RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding (132 aa)
     
 
  0.632
Bra031220
AT2G21880 (E=2e-077) ATRAB7A, ATRABG2 | ATRAB7A; GTP binding (177 aa)
     
 
  0.632
Bra030395
AT1G52280 (E=4e-117) AtRABG3d | AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding (206 aa)
     
 
  0.632
Bra030274
AT2G21880 (E=1e-096) ATRAB7A, ATRABG2 | ATRAB7A; GTP binding (210 aa)
     
 
  0.632
Bra023773
AT1G22740 (E=3e-017) RAB7, ATRABG3B, RAB75, RABG3B | RABG3B; GTP binding (75 aa)
     
 
  0.632
Bra022360
AT3G18820 (E=1e-115) ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding (206 aa)
     
 
  0.632
Bra018959
AT1G52280 (E=4e-117) AtRABG3d | AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding (206 aa)
     
 
  0.632
Bra016372
AT1G22740 (E=1e-093) RAB7, ATRABG3B, RAB75, RABG3B | RABG3B; GTP binding (349 aa)
     
 
  0.632
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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