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Bra001046 protein (Brassica rapa) - STRING interaction network
"Bra001046" - AT3G02470 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001046AT3G02470 (E=8e-179) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (444 aa)    
Predicted Functional Partners:
Bra022631
AT5G53120 (E=2e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (355 aa)
     
 
  0.956
Bra003082
AT5G53120 (E=9e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (361 aa)
     
 
  0.956
Bra024620
AT1G70310 (E=8e-158) SPDS2 | SPDS2 (spermidine synthase 2); spermidine synthase (344 aa)
     
 
  0.948
Bra016329
AT1G23820 (E=3e-168) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (333 aa)
     
 
  0.948
Bra041036
AT1G02500 (E=5e-207) SAM1, SAM-1, MAT1 | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (391 aa)
         
  0.901
Bra021241
AT3G17390 (E=3e-217) MTO3, SAMS3, MAT4 | MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (393 aa)
         
  0.901
SAMS
AT4G01850 (E=2e-222) SAM-2, MAT2 | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); copper ion binding / methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (393 aa)
         
  0.901
Bra023084
AT2G36880 (E=4e-220) MAT3 | MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (390 aa)
         
  0.811
Bra017219
AT2G36880 (E=3e-218) MAT3 | MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (390 aa)
         
  0.811
Bra002244
AT5G19530 (E=2e-185) ACL5 | ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase (332 aa)
     
 
  0.791
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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