STRINGSTRING
Bra001048 protein (Brassica rapa) - STRING interaction network
"Bra001048" - AT3G02500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001048AT3G02500 (E=1e-076) | unknown protein (265 aa)    
Predicted Functional Partners:
Bra026511
AT3G25700 (E=3e-207) | chloroplast nucleoid DNA-binding protein-related (451 aa)
           
  0.605
Bra024732
AT1G25682 (E=3e-136) | cell cycle control protein-related (314 aa)
           
  0.605
Bra011006
AT1G25682 (E=1e-132) | cell cycle control protein-related (314 aa)
           
  0.571
Bra019820
AT1G13250 (E=1e-186) GATL3 | GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (342 aa)
           
  0.504
Bra011009
AT1G26110 (E=8e-228) | unknown protein (597 aa)
           
  0.501
Bra012470
AT1G25580 (E=3e-177) ANAC008 | ANAC008 (Arabidopsis NAC domain containing protein 8); transcription factor (1172 aa)
           
  0.433
Bra034012
AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1) (1115 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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